Package: MassSpecWavelet 1.79.2

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

MassSpecWavelet_1.79.2.tar.gz
MassSpecWavelet_1.79.2.zip(r-4.7-x86_64)MassSpecWavelet_1.79.2.zip(r-4.7-arm64)MassSpecWavelet_1.79.2.zip(r-4.6-x86_64)MassSpecWavelet_1.79.2.zip(r-4.6-arm64)MassSpecWavelet_1.79.2.zip(r-4.5-x86_64)
MassSpecWavelet_1.79.2.tgz(r-4.6-x86_64)MassSpecWavelet_1.79.2.tgz(r-4.6-arm64)MassSpecWavelet_1.79.2.tgz(r-4.5-x86_64)MassSpecWavelet_1.79.2.tgz(r-4.5-arm64)
MassSpecWavelet_1.79.2.tar.gz(r-4.7-arm64)MassSpecWavelet_1.79.2.tar.gz(r-4.7-x86_64)MassSpecWavelet_1.79.2.tar.gz(r-4.6-arm64)MassSpecWavelet_1.79.2.tar.gz(r-4.6-x86_64)
MassSpecWavelet_1.79.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MassSpecWavelet/json (API)

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://zeehio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.79.2(bioc 3.24)MassSpecWavelet-1.78.2(bioc 3.23)

immunooncologymassspectrometryproteomicspeakdetection

8.39 score 11 stars 23 packages 50 scripts 13 exports 0 dependencies

Last updated from:1665dd8ea2. Checks:13 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE98
linux-devel-x86_64NOTE147
source / vignettesOK207
linux-release-arm64NOTE97
linux-release-x86_64NOTE121
macos-release-arm64NOTE96
macos-release-x86_64NOTE174
macos-oldrel-arm64NOTE126
macos-oldrel-x86_64NOTE248
windows-devel-arm64NOTE365
windows-devel-x86_64NOTE139
windows-release-arm64NOTE376
windows-release-x86_64NOTE93
windows-oldrel-x86_64NOTE89
wasm-releaseOK76

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Using the MassSpecWavelet package
Version Info | Overview of MassSpecWavelet | Peak detection by using CWT-based pattern matching | Continuous wavelet transform with Mexican Hat wavelet | Peak identification process | Refine the peak parameter estimation | Future Extension | Acknowledgments | Session Information
Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdown

Last update: 2023-01-30
Started: 2022-04-04

Finding local maxima with MassSpecWavelet
Introduction | Problems with the classic algorithm | The new local maximum algorithm | Computational cost | Comparison on a real signal | Session Information
Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdown

Last update: 2022-10-10
Started: 2022-10-06