Package: MassSpecWavelet 1.73.1

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

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MassSpecWavelet.pdf |MassSpecWavelet.html
MassSpecWavelet/json (API)
NEWS

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://zeehio.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.73.0(bioc 3.21)MassSpecWavelet-1.72.0(bioc 3.20)

immunooncologymassspectrometryproteomicspeakdetection

7.74 score 8 stars 15 packages 36 scripts 13 exports 0 dependencies

Last updated 9 days agofrom:54438201a5. Checks:OK: 1 NOTE: 8. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 18 2024
R-4.5-win-x86_64NOTEDec 18 2024
R-4.5-linux-x86_64NOTEDec 18 2024
R-4.4-win-x86_64NOTEDec 18 2024
R-4.4-mac-x86_64NOTEDec 18 2024
R-4.4-mac-aarch64NOTEDec 18 2024
R-4.3-win-x86_64NOTEDec 18 2024
R-4.3-mac-x86_64NOTEDec 18 2024
R-4.3-mac-aarch64NOTEDec 18 2024

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Finding local maxima with MassSpecWavelet

Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2022-10-10
Started: 2022-10-06

Using the MassSpecWavelet package

Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2023-01-30
Started: 2022-04-04