Package: MassSpecWavelet 1.73.1

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

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MassSpecWavelet.pdf |MassSpecWavelet.html✨
MassSpecWavelet/json (API)
NEWS

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://zeehio.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.73.1(bioc 3.21)MassSpecWavelet-1.72.1(bioc 3.20)

immunooncologymassspectrometryproteomicspeakdetection

7.85 score 9 stars 17 packages 37 scripts 13 exports 0 dependencies

Last updated 3 months agofrom:54438201a5. Checks:1 OK, 10 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 16 2025
R-4.5-win-x86_64NOTEFeb 16 2025
R-4.5-mac-x86_64NOTEFeb 16 2025
R-4.5-mac-aarch64NOTEFeb 16 2025
R-4.5-linux-x86_64NOTEFeb 16 2025
R-4.4-win-x86_64NOTEFeb 16 2025
R-4.4-mac-x86_64NOTEFeb 16 2025
R-4.4-mac-aarch64NOTEFeb 16 2025
R-4.3-win-x86_64NOTEFeb 16 2025
R-4.3-mac-x86_64NOTEFeb 16 2025
R-4.3-mac-aarch64NOTEFeb 16 2025

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Finding local maxima with MassSpecWavelet

Sergio Oller

Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2022-10-10
Started: 2022-10-06

Using the MassSpecWavelet package

Pan Du, Warren A. Kibbe, Simon Lin

Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdownon Feb 16 2025.

Last update: 2023-01-30
Started: 2022-04-04