Enable parallellization | Data: The MeOH_plasma_extraction dataset | Loading samples | Adding metadata | Interpolation | Plotting samples | Creating interactive plots | Exclude regions | Filter samples | Robust PCA for outlier detection | Baseline removal | Peak detection | Spectra alignment | Normalization | Peak integration | 1. Integration based on peak center and width | 2. Integration based on peak boundaries | Identification | Final thoughts

Downloading the dataset | Import data | Create a GCIMSDataset object | Filter the retention and drift time of your samples | Smoothing | Decimation | Alignment | Peaks | Clustering | Baseline correction | Peak integration | Build peak table | Imputation | Session Info:

Getting started | Enable parallellization | Data: The MeOH_plasma_extraction dataset | Loading samples | Adding annotations | Phasing | Interpolation | Plotting samples | Exclude regions | Filter samples | Robust PCA for outlier detection | Baseline estimation | Peak detection | Spectra alignment | Normalization | Peak grouping | Session Info:

Quickstart | Basic syntax | Example: | The .col pronoun

Introduction | Creating GCIMSSample objects | Create the GCIMSDataset | Session info

Enable parallellization | Data: The MeOH_plasma_extraction dataset | Loading samples | Adding metadata | Interpolation | Plotting samples | Creating interactive plots | Exclude regions | Filter samples | Robust PCA for outlier detection | Baseline removal | Peak detection | Spectra alignment | Normalization | Peak integration | 1. Integration based on peak center and width | 2. Integration based on peak boundaries | Identification | Final thoughts

Getting started | Enable parallellization | Data: The MeOH_plasma_extraction dataset | Loading samples | Adding annotations | Phasing | Interpolation | Plotting samples | Exclude regions | Filter samples | Robust PCA for outlier detection | Baseline estimation | Peak detection | Spectra alignment | Normalization | Peak grouping | Session Info:

Introduction | Batch modifying all samples | Example: | Save additional information within each sample | Example | Extracting and aggregating information from samples into the dataset | Extraction | Check that it works: | Aggregation | Session info

Version Info | Overview of MassSpecWavelet | Peak detection by using CWT-based pattern matching | Continuous wavelet transform with Mexican Hat wavelet | Peak identification process | Refine the peak parameter estimation | Future Extension | Acknowledgments | Session Information

Version Info | Overview of MassSpecWavelet | Peak detection by using CWT-based pattern matching | Continuous wavelet transform with Mexican Hat wavelet | Peak identification process | Refine the peak parameter estimation | Future Extension | Acknowledgments | Session Information

Introduction | Problems with the classic algorithm | The new local maximum algorithm | Computational cost | Comparison on a real signal | Session Information

Introduction | Problems with the classic algorithm | The new local maximum algorithm | Computational cost | Comparison on a real signal | Session Information

Getting started | Exploring the sample metadata | Sample annotations | Further annotations | Summary | Session Information

Getting started | Exploring the sample metadata | Sample annotations | Further annotations | Summary | Session Information